Sorry for the tardy reply. I need to subscribe to the thread so I know when someone replies.
If you are looking at the transmission with output shaft to the left (the manual control shaft pointing toward you), then the top spring is the Neutral-Drive, the middle spring is the 3-4, and the bottom is the 1-2.
Go to this site:
Transtar Industries, Inc. - Catalogs They have incredible pictures of the transmissions. The answer to your question is, there are four clutches. The forward, intermediate, and direct clutch are grouped together in the shell assembly. The reverse clutch is separate. The forward clutch is the "top" of the shell assembly. The direct and intermediate clutches are part of a single casting, but are separate clutches. The direct clutch is on the "top" of this two clutch assembly.
I am not a professional mechanic, but my (admittedly limited) experience has taught me a couple of things: Get a manual, check every part for tolerance, free movement, etc. (especially the valve body), and work carefully (don't mix up parts, keep sub-assemblies together).
I suspect your problem may be in the valve body. Most problems are very apparent from visual inspection. If the solenoids are good, it's probably mechanical. If you suspect leaks, get a gaskets and seals kit and replace them all.