Craig,
A guess; how did you test the batty after charging?
Rec. taking it out & having Sears or AZ, etc. test it under load.
Here is some info:
http://www.forparts.com/techbosbattery.htm
Next test is:
from L, a good pal:
"Assuming the battery is good, the way the pros track down drains is to disconnect the battery positive terminal and put an ammeter inline with the battery stud and the positive cable. You can use a cheapo radio shack meter, but make sure it has a 10A or so range. Obviously, if you try to start the engine with this setup, you'll smoke your meter.
If you have a drain on the system, you will show a current flow on the meter. Generally it is a half amp to an amp, but I've seen it go a lot higher. Go to the fuse block and start pulling fuses one at a time until you find one that makes the drain go away. Now you'll be able to use a schematic to track down what's not turning off.
If the fuse box doesn't give you a culprit, remove the cables from the battery side of the solenoid. Same situation as the fuse block, one of them may give you a circuit to trace out.
It can take some time to track down drains, just be methodical and keep eliminating possibilities one at a time until you find the problem.
BTW, the test light trick isn't reliable. You ned to be able to measure the current so that things like clock power and keep alive voltage for the CPU don't throw you off."
some commom Bronco batty drains are the fuel pump relay; can "hang-up"; do you hear the fuel pump running w/engine off? if so...pull the relay & c to see if pump shuts down; pull another realy (forget which one is same rating, and insert in the FP relay position to see if pump shuts down and amp meter returns to low current draw,.
Brake lights; bad bl switch
etc.
and a bad alt; even tho it was tested good; see:
http://www.misterfixit.com/baddiode.htm
a bad alt connector plug;
http://www.nastra.com/images/tech107.htm
Ignition Switch Fires, 88-93,
1988-89 Ford Crown Victoria, Tempo Topaz, Mercury Cougar; 1988-90 Escort, EXP; 1988 Mustang Thunderbird; 1988-93 Aerostar Bronco F150, F250, F350, Grand Marquis; 1988-91 Lincoln Town Car
Number of vehicles: 7,500,000
Ignition switch could experience an internal short circuit which can cause overheating, smoke, and fire in the steering column area.
http://www.safetyforum.com/fordfires/defrec.html